An insight into cyanobacterial genomics - a perspective

Integrating Markov clustering and molecular phylogenetics to reconstruct the cyanobacterial species tree from conserved protein families.

Attempts to classify living organisms by their physical characteristics are as old as biology itself. The advent of protein and DNA sequencing--most notably the use of 16S ribosomal RNA--defined a new level of classification that now forms our basic understanding of the history of life on earth. High-throughput sequencing currently provides DNA sequences at an unprecedented rate, not only provi...

An Insight into the Model Structures Applied in DEA-Based Bank Branch Efficiency Measurements

In this paper, we focus on the Data Envelopment Analysis (DEA)-based model structures have been used in assessing bank branch efficiency. Probing the methodologies of 75 published studies at the branch level since 1985 to early 2015, we found that these models can be divided into four categories: standard basic DEA models, single level and multi-level models, enriched (hybrid) models and specia...

Algal Genomics: Exploring the Imprint of Endosymbiosis

The nuclear genomes of photosynthetic eukaryotes are littered with genes derived from the cyanobacterial progenitor of modern-day plastids. A genomic analysis of Cyanophora paradoxa - a deeply diverged unicellular alga - suggests that the abundance and functional diversity of nucleus-encoded genes of cyanobacterial origin differs in plants and algae.

Chapter 17: The genetics and genomics of cyanobacterial toxicity

Comparison of Envelope-Related Genes in Unicellular and Filamentous Cyanobacteria

To elucidate the evolution of cyanobacterial envelopes and the relation between gene content and environmental adaptation, cell envelope structures and components of unicellular and filamentous cyanobacteria were analyzed in comparative genomics. Hundreds of envelope biogenesis genes were divided into 5 major groups and annotated according to their conserved domains and phylogenetic profiles. C...